Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10495015	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10779664	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11585423	1.00[CEU][hapmap];0.80[YRI][hapmap];0.93[EUR][1000 genomes]
rs12042718	0.93[ASN][1000 genomes]
rs12123638	0.82[JPT][hapmap]
rs12562620	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs12751218	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs12759474	0.82[CEU][hapmap]
rs12759921	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1544298	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1544299	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1811900	0.82[CEU][hapmap]
rs2068721	1.00[CEU][hapmap];0.89[CHB][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2147477	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap]
rs2199101	0.82[CEU][hapmap]
rs35963782	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4308954	0.91[EUR][1000 genomes]
rs442028	0.82[JPT][hapmap]
rs4971263	0.82[JPT][hapmap]
rs4971264	0.82[CEU][hapmap]
rs9727182	0.82[CEU][hapmap]
rs9728510	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv873172	chr1:216144827-216281673	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv873176	chr1:216249570-216363137	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216267000-216269800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr1:216267200-216269400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:216267600-216268400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:216268000-216269600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr1:216268000-216269600	Enhancers	HUES6 Cell Line	embryonic stem cell

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