Variant report
Variant | rs12123994 |
---|---|
Chromosome Location | chr21:28893647-28893648 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10801413 | 0.84[ASN][1000 genomes] |
rs10801417 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10801503 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10801504 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10921829 | 0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs10921850 | 0.94[ASN][1000 genomes] |
rs10921851 | 0.94[ASN][1000 genomes] |
rs11581111 | 0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs1171945 | 0.97[ASN][1000 genomes] |
rs1171946 | 0.97[ASN][1000 genomes] |
rs1171947 | 0.97[ASN][1000 genomes] |
rs11804370 | 0.82[ASN][1000 genomes] |
rs12118925 | 0.85[ASN][1000 genomes] |
rs12119559 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12407809 | 0.87[ASN][1000 genomes] |
rs12732169 | 0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs1336889 | 0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1336890 | 0.94[ASN][1000 genomes] |
rs1415144 | 0.94[ASN][1000 genomes] |
rs1847171 | 0.84[ASN][1000 genomes] |
rs1856848 | 0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs2184832 | 0.97[ASN][1000 genomes] |
rs269735 | 0.85[ASN][1000 genomes] |
rs269741 | 0.85[ASN][1000 genomes] |
rs3909054 | 0.81[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1067475 | chr21:28238746-29046707 | Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
2 | nsv459229 | chr21:28543456-29482488 | Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
3 | nsv587342 | chr21:28543456-29482488 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
4 | nsv916307 | chr21:28762455-28905095 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv834071 | chr21:28806911-28988880 | Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr21:28892200-28898800 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |