The 2.0 version of rSNPBase

Variant report

Variant rs12125690
Chromosome Location chr1:222010866-222010867
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:36 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:222000600-222019000 Weak transcription Lung lung
2 chr1:222000800-222011000 Weak transcription Thymus Thymus
3 chr1:222001200-222011000 Weak transcription Fetal Thymus thymus
4 chr1:222004200-222011000 Weak transcription Primary T helper naive cells from peripheral blood blood
5 chr1:222004200-222012800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr1:222004400-222011000 Weak transcription Primary T cells fromperipheralblood blood
7 chr1:222004600-222011200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
8 chr1:222005800-222019000 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr1:222006200-222012600 Weak transcription Muscle Satellite Cultured Cells --
10 chr1:222006400-222011400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
11 chr1:222006800-222012600 Weak transcription Esophagus oesophagus
12 chr1:222007600-222011400 Weak transcription HUVEC blood vessel
13 chr1:222008200-222013400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr1:222008400-222012600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr1:222008600-222012600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr1:222008600-222012600 Weak transcription NHEK skin
17 chr1:222008800-222013800 Weak transcription Fetal Lung lung
18 chr1:222008800-222018800 Weak transcription ES-WA7 Cell Line embryonic stem cell
19 chr1:222009000-222012800 Weak transcription Placenta Amnion Placenta Amnion
20 chr1:222009200-222011000 Enhancers GM12878-XiMat blood
21 chr1:222009400-222012600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr1:222009400-222012800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr1:222009600-222012800 Weak transcription Breast Myoepithelial Primary Cells Breast
24 chr1:222009600-222013200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
25 chr1:222009800-222011200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr1:222009800-222012600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr1:222010000-222011400 Weak transcription ES-I3 Cell Line embryonic stem cell
28 chr1:222010200-222012600 Weak transcription HMEC breast
29 chr1:222010400-222011200 Enhancers Primary T cells from cord blood blood
30 chr1:222010400-222011200 Enhancers Primary hematopoietic stem cells short term culture blood
31 chr1:222010400-222015200 Enhancers Primary B cells from peripheral blood blood
32 chr1:222010600-222011000 Enhancers Dnd41 blood
33 chr1:222010600-222012600 Weak transcription Hela-S3 cervix
34 chr1:222010600-222015000 Enhancers Primary hematopoietic stem cells blood
35 chr1:222010800-222011800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr1:222010800-222013800 Enhancers Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015