Variant report

Variant	rs12126566
Chromosome Location	chr1:171729930-171729931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10489249	0.91[ASN][1000 genomes]
rs10489251	0.91[ASN][1000 genomes]
rs10753181	0.90[ASN][1000 genomes]
rs10913578	0.90[ASN][1000 genomes]
rs10913582	0.91[ASN][1000 genomes]
rs10913587	0.91[ASN][1000 genomes]
rs11577073	0.91[ASN][1000 genomes]
rs11577197	0.91[ASN][1000 genomes]
rs11577745	0.91[ASN][1000 genomes]
rs11578699	0.91[ASN][1000 genomes]
rs11578723	0.91[ASN][1000 genomes]
rs11580522	0.91[ASN][1000 genomes]
rs11590680	0.91[ASN][1000 genomes]
rs11590714	0.91[ASN][1000 genomes]
rs12119232	0.86[ASN][1000 genomes]
rs16843230	0.88[ASN][1000 genomes]
rs16843251	0.91[ASN][1000 genomes]
rs17649050	0.90[ASN][1000 genomes]
rs17649068	0.91[ASN][1000 genomes]
rs2421911	0.87[ASN][1000 genomes]
rs3753539	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12126566	VAMP4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171723600-171730200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:171724200-171731400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:171727800-171730200	Weak transcription	K562	blood
4	chr1:171729600-171730800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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