Variant report

Variant	rs12128122
Chromosome Location	chr1:76834705-76834706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10747346	0.82[CHB][hapmap]
rs10747347	0.82[CHB][hapmap]
rs11162135	0.83[CHB][hapmap]
rs11162144	0.86[CHB][hapmap]
rs12029184	0.83[CHB][hapmap]
rs12032409	0.86[CHB][hapmap]
rs12035993	0.83[CHB][hapmap];0.80[CHD][hapmap]
rs12046895	0.82[CHB][hapmap]
rs1325291	0.83[CHB][hapmap];0.80[CHD][hapmap]
rs1359467	0.82[CHB][hapmap]
rs1359470	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1359471	0.83[CHB][hapmap]
rs1408866	0.83[CHB][hapmap];0.80[CHD][hapmap]
rs1952022	0.95[CHB][hapmap];0.93[ASN][1000 genomes]
rs2031482	0.83[CHB][hapmap]
rs4459158	0.85[CHB][hapmap]
rs4638174	0.95[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs6666049	0.83[CHB][hapmap]
rs6689933	0.95[CHB][hapmap];0.86[CHD][hapmap];0.89[ASN][1000 genomes]
rs7339997	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1006776	chr1:76777323-76899975	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1014231	chr1:76781140-76880630	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv462006	chr1:76826279-77042405	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv546585	chr1:76826279-77042405	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76832800-76849200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:76833200-76847400	Weak transcription	Fetal Stomach	stomach

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