Variant report

Variant	rs12129457
Chromosome Location	chr1:169625312-169625313
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs3917771	1.00[ASN][1000 genomes]
rs3917779	1.00[ASN][1000 genomes]
rs3917795	1.00[ASN][1000 genomes]
rs3917797	1.00[ASN][1000 genomes]
rs3917803	1.00[ASN][1000 genomes]
rs3917806	1.00[ASN][1000 genomes]
rs3917811	1.00[ASN][1000 genomes]
rs3917819	1.00[ASN][1000 genomes]
rs3917820	1.00[ASN][1000 genomes]
rs3917824	1.00[ASN][1000 genomes]
rs3917862	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6132	1.00[ASN][1000 genomes]
rs6133	1.00[ASN][1000 genomes]
rs6135	1.00[ASN][1000 genomes]
rs742125	1.00[ASN][1000 genomes]
rs9287095	1.00[ASN][1000 genomes]
rs9332579	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169618600-169633800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr1:169619400-169626200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:169619600-169631400	Weak transcription	Primary T cells from cord blood	blood
4	chr1:169620000-169625400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr1:169620200-169629400	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:169620600-169626000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr1:169622800-169625800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr1:169623400-169628800	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr1:169624200-169628000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr1:169624800-169625400	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr1:169624800-169625800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:169625000-169625600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:169625000-169626200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr1:169625000-169628400	Enhancers	Primary B cells from peripheral blood	blood
15	chr1:169625200-169626000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr1:169625200-169626200	ZNF genes & repeats	Primary B cells from cord blood	blood
17	chr1:169625200-169626400	Enhancers	Primary T cells fromperipheralblood	blood
18	chr1:169625200-169626600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:169625200-169626600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links