Variant report

Variant	rs12131182
Chromosome Location	chr1:159041418-159041419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12132363	1.00[EUR][1000 genomes]
rs12139815	1.00[EUR][1000 genomes]
rs41264459	0.92[EUR][1000 genomes]
rs55636219	0.91[AFR][1000 genomes]
rs58917323	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872486	chr1:158979191-159090256	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159036200-159041800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:159038400-159045400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr1:159038600-159056400	Weak transcription	Spleen	Spleen
4	chr1:159038800-159042000	Enhancers	Primary B cells from cord blood	blood
5	chr1:159039000-159042000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:159039000-159044000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr1:159039000-159044600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr1:159039000-159046600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:159039200-159042000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr1:159039800-159041600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr1:159039800-159041800	Genic enhancers	Monocytes-CD14+_RO01746	blood
12	chr1:159039800-159044600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:159040000-159045400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr1:159040800-159042200	Enhancers	Primary B cells from peripheral blood	blood
15	chr1:159041400-159042000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr1:159041400-159042000	Enhancers	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links