Variant report

Variant	rs12133134
Chromosome Location	chr1:212392557-212392558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212391958..212394846-chr1:212458658..212460726,2	K562	blood:
2	chr1:212374422..212376046-chr1:212392215..212393758,2	K562	blood:

Variant related genes	Relation type
ENSG00000066027	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1011232	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[EUR][1000 genomes]
rs10735509	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs10863955	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs10863957	0.85[CHB][hapmap]
rs10863958	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs11119873	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11119886	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs11119888	0.85[CHB][hapmap]
rs11119890	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[EUR][1000 genomes]
rs11119891	0.82[CHB][hapmap]
rs11119918	1.00[CEU][hapmap]
rs11119928	1.00[CEU][hapmap]
rs12022111	0.85[ASN][1000 genomes]
rs12024457	1.00[AFR][1000 genomes]
rs12119183	0.84[EUR][1000 genomes]
rs12124065	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12127954	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12132912	0.85[EUR][1000 genomes]
rs12133636	1.00[CEU][hapmap]
rs12134276	1.00[CEU][hapmap]
rs12134599	1.00[CEU][hapmap]
rs12136808	0.83[ASN][1000 genomes]
rs1493602	0.85[ASN][1000 genomes]
rs17018777	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs2236598	0.84[EUR][1000 genomes]
rs3754142	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs3767870	1.00[AFR][1000 genomes]
rs399429	0.96[ASN][1000 genomes]
rs4951580	0.99[ASN][1000 genomes]
rs4951596	1.00[AFR][1000 genomes]
rs884923	0.97[ASN][1000 genomes]
rs9793334	0.84[ASN][1000 genomes]
rs9793974	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999738	chr1:212218618-212513690	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1009376	chr1:212292357-212680320	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv549139	chr1:212332294-212876902	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212383000-212393000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:212383400-212394600	Weak transcription	Left Ventricle	heart
3	chr1:212388600-212393000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:212388600-212393200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:212389000-212393000	Weak transcription	Fetal Intestine Large	intestine
6	chr1:212390800-212392600	Enhancers	Adipose Nuclei	Adipose
7	chr1:212390800-212393800	Enhancers	Fetal Heart	heart
8	chr1:212391000-212392600	Enhancers	HUVEC	blood vessel
9	chr1:212391000-212393400	Enhancers	Stomach Mucosa	stomach
10	chr1:212391000-212393800	Enhancers	Fetal Thymus	thymus
11	chr1:212391000-212393800	Enhancers	Thymus	Thymus
12	chr1:212391000-212393800	Enhancers	NHDF-Ad	bronchial
13	chr1:212391200-212392600	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr1:212391200-212392600	Enhancers	Spleen	Spleen
15	chr1:212391200-212392800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:212391200-212393000	Weak transcription	Placenta	Placenta
17	chr1:212391200-212393600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr1:212391200-212393800	Enhancers	HSMMtube	muscle
19	chr1:212391200-212394000	Enhancers	Fetal Kidney	kidney
20	chr1:212391200-212394000	Enhancers	Fetal Lung	lung
21	chr1:212391200-212399000	Weak transcription	Pancreas	Pancrea
22	chr1:212391400-212392600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr1:212391600-212392800	Enhancers	Osteobl	bone
24	chr1:212391600-212393400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr1:212391600-212393600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:212391600-212393800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:212391800-212392600	Enhancers	Primary B cells from peripheral blood	blood
28	chr1:212391800-212392600	Enhancers	Dnd41	blood
29	chr1:212391800-212393200	Enhancers	Primary T cells from cord blood	blood
30	chr1:212391800-212393400	Weak transcription	Lung	lung
31	chr1:212391800-212393800	Enhancers	HSMM	muscle
32	chr1:212392000-212392600	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
33	chr1:212392000-212393000	Weak transcription	Small Intestine	intestine
34	chr1:212392000-212393400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr1:212392000-212393600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr1:212392000-212393800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr1:212392000-212393800	Enhancers	NH-A	brain
38	chr1:212392000-212396000	Enhancers	K562	blood
39	chr1:212392000-212399400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr1:212392200-212392600	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr1:212392200-212392600	Enhancers	Primary B cells from cord blood	blood
42	chr1:212392200-212392600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr1:212392200-212392600	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr1:212392200-212393000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr1:212392200-212393200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr1:212392200-212393200	Weak transcription	Fetal Intestine Small	intestine
47	chr1:212392200-212393200	Enhancers	GM12878-XiMat	blood
48	chr1:212392200-212393600	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr1:212392200-212393800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr1:212392200-212395200	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links