Variant report

Variant	rs12133160
Chromosome Location	chr1:56850099-56850100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11206797	0.83[AFR][1000 genomes]
rs12120414	0.90[AFR][1000 genomes]
rs12562368	0.83[AFR][1000 genomes]
rs6671902	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7531629	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7544522	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56840000-56862400	Weak transcription	Gastric	stomach
2	chr1:56842400-56862400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:56842600-56850600	Weak transcription	NHDF-Ad	bronchial
4	chr1:56842600-56859800	Weak transcription	Right Ventricle	heart
5	chr1:56843000-56861800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:56844000-56855800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:56844200-56857800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:56844600-56853000	Weak transcription	Left Ventricle	heart
9	chr1:56845400-56856000	Weak transcription	HepG2	liver
10	chr1:56846800-56850400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:56850000-56857000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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