Variant report

Variant	rs1213361
Chromosome Location	chr6:78202312-78202313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr6:78202230-78202691	HepG2	liver:	n/a	n/a
2	FOXA1	chr6:78202212-78202656	HepG2	liver:	n/a	n/a
3	FOXA1	chr6:78202307-78202561	HepG2	liver:	n/a	n/a
4	MYBL2	chr6:78202250-78202543	HepG2	liver:	n/a	n/a
5	EP300	chr6:78202227-78202595	HepG2	liver:	n/a	n/a
6	SP1	chr6:78202257-78202615	A549	lung:	n/a	n/a
7	FOXA1	chr6:78202303-78202618	HepG2	liver:	n/a	n/a
8	FOXA2	chr6:78202304-78202597	HepG2	liver:	n/a	n/a
9	TCF12	chr6:78202244-78202607	A549	lung:	n/a	n/a
10	GATA3	chr6:78202263-78202743	MCF-7	breast:	n/a	chr6:78202533-78202554 chr6:78202381-78202393
11	NFIC	chr6:78202207-78202625	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
RPS6P7	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1213356	0.98[EUR][1000 genomes]
rs1213357	0.98[EUR][1000 genomes]
rs1213358	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1213359	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1213360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1213362	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1213364	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1213374	0.92[EUR][1000 genomes]
rs1213380	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1213381	0.92[EUR][1000 genomes]
rs1213382	0.92[EUR][1000 genomes]
rs1213383	0.90[EUR][1000 genomes]
rs1361847	0.87[EUR][1000 genomes]
rs1458442	0.90[EUR][1000 genomes]
rs1778257	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2504277	0.91[EUR][1000 genomes]
rs2798506	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2798507	0.97[EUR][1000 genomes]
rs2798509	0.92[EUR][1000 genomes]
rs2798950	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2798951	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2798952	0.91[EUR][1000 genomes]
rs6929862	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs922018	0.92[EUR][1000 genomes]
rs9343616	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9352484	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534282	chr6:77764575-78351994	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1034979	chr6:77781244-78426249	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538324	chr6:77781244-78426249	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1015307	chr6:77902559-78352291	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1028259	chr6:78059491-78709871	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv538325	chr6:78059491-78709871	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv2758062	chr6:78100020-78283042	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2759445	chr6:78100020-78283042	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:78200600-78203600	Enhancers	Stomach Mucosa	stomach
2	chr6:78201200-78202600	Strong transcription	HUVEC	blood vessel
3	chr6:78202000-78203000	Enhancers	HepG2	liver

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