Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1213523	1.00[EUR][1000 genomes]
rs1334002	1.00[EUR][1000 genomes]
rs1334003	1.00[EUR][1000 genomes]
rs1334004	1.00[EUR][1000 genomes]
rs1334005	1.00[EUR][1000 genomes]
rs1334006	1.00[EUR][1000 genomes]
rs1334007	1.00[EUR][1000 genomes]
rs1413369	1.00[EUR][1000 genomes]
rs1611913	1.00[EUR][1000 genomes]
rs1619317	1.00[EUR][1000 genomes]
rs1760603	1.00[EUR][1000 genomes]
rs1760604	1.00[EUR][1000 genomes]
rs1762721	1.00[EUR][1000 genomes]
rs2007130	1.00[EUR][1000 genomes]
rs2781156	1.00[EUR][1000 genomes]
rs2783046	1.00[EUR][1000 genomes]
rs2783047	1.00[EUR][1000 genomes]
rs2783048	1.00[EUR][1000 genomes]
rs3795698	1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs526710	1.00[EUR][1000 genomes]
rs537762	1.00[EUR][1000 genomes]
rs610454	1.00[EUR][1000 genomes]
rs610876	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs610986	1.00[EUR][1000 genomes]
rs629263	1.00[EUR][1000 genomes]
rs641226	1.00[EUR][1000 genomes]
rs6424434	1.00[EUR][1000 genomes]
rs643801	1.00[EUR][1000 genomes]
rs654735	1.00[EUR][1000 genomes]
rs657021	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1007250	chr1:71998391-72350683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv534992	chr1:71998391-72350683	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv948821	chr1:72049987-72477221	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:72040800-72062000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:72048400-72050800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:72049200-72050800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:72049400-72050000	Enhancers	Monocytes-CD14+_RO01746	blood

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