Variant report

Variant	rs12136311
Chromosome Location	chr1:150168195-150168196
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000178096	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000184678	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10888575	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11205339	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12131063	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12133238	0.83[EUR][1000 genomes]
rs1535873	0.83[AMR][1000 genomes]
rs3118124	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59507173	0.83[AMR][1000 genomes]
rs6660127	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6692738	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6703332	0.83[AMR][1000 genomes]
rs7551023	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv535153	chr1:150147218-150168829	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150167200-150168800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:150167400-150171200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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