Variant report

Variant	rs12136436
Chromosome Location	chr1:90805701-90805702
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12119538	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12124677	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12127465	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12129462	0.91[EUR][1000 genomes]
rs12136957	0.91[EUR][1000 genomes]
rs12137705	0.90[EUR][1000 genomes]
rs12142230	0.88[EUR][1000 genomes]
rs1396317	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61770072	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524317	chr1:90729744-90836739	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv521123	chr1:90770566-90836739	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv870546	chr1:90783440-90816579	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90804400-90807000	Enhancers	Primary hematopoietic stem cells	blood
2	chr1:90805000-90806000	Flanking Active TSS	Dnd41	blood
3	chr1:90805000-90806600	Enhancers	Primary T cells from cord blood	blood
4	chr1:90805000-90806600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr1:90805000-90806600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:90805200-90806200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:90805200-90806400	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr1:90805400-90806600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
9	chr1:90805600-90806000	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr1:90805600-90806000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:90805600-90806600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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