Variant report

Variant	rs12137660
Chromosome Location	chr1:166009843-166009844
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12145161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4072243	1.00[CEU][hapmap]
rs71628397	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166009200-166010000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr1:166009200-166010200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr1:166009200-166010200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:166009200-166010600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr1:166009400-166010200	Enhancers	Brain Germinal Matrix	brain
6	chr1:166009600-166010000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr1:166009600-166010200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:166009600-166010400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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