Variant report
| Variant | rs1213857 |
|---|---|
| Chromosome Location | chr1:119160583-119160584 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| PSMC1P12 | TF binding region |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10494211 | 0.94[ASN][1000 genomes] |
| rs3863757 | 0.94[ASN][1000 genomes] |
| rs3903912 | 0.93[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs4633275 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs58780415 | 0.97[ASN][1000 genomes] |
| rs60134893 | 0.97[ASN][1000 genomes] |
| rs73003504 | 0.97[ASN][1000 genomes] |
| rs73003506 | 0.97[ASN][1000 genomes] |
| rs73003509 | 0.97[ASN][1000 genomes] |
| rs73003531 | 0.97[ASN][1000 genomes] |
| rs73005259 | 0.97[ASN][1000 genomes] |
| rs73005266 | 0.97[ASN][1000 genomes] |
| rs7533117 | 0.92[CHB][hapmap];0.89[JPT][hapmap] |
| rs7543320 | 0.92[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs7543613 | 0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3494191 | chr1:118772550-119719548 | Enhancers Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
| 2 | esv3494192 | chr1:118772550-119719548 | Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
