Variant report

Variant	rs1213957
Chromosome Location	chr2:124806547-124806548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1213953	0.84[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1213954	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1213955	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1213963	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1213965	0.84[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1213966	0.84[YRI][hapmap]
rs17010782	1.00[ASW][hapmap];0.95[LWK][hapmap];0.90[MKK][hapmap];0.84[YRI][hapmap]
rs17010787	0.84[YRI][hapmap]
rs61605355	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1213957	CTSW	trans	lymphoblastoid	seeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124803400-124807400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr2:124804400-124806600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:124804600-124807000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:124804600-124807600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr2:124805000-124806800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:124805000-124807200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr2:124805600-124806600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:124805600-124806600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:124805600-124806800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr2:124805600-124810000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr2:124805800-124806600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr2:124806400-124807000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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