Variant report

Variant	rs12140045
Chromosome Location	chr1:58254860-58254861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11207108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12127067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12128787	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12129754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12133585	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12140531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12141699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1323840	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2897364	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4912282	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv3361198	chr1:58251614-58254912	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58253800-58255000	Enhancers	Dnd41	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links