Variant report
Variant | rs12141155 |
---|---|
Chromosome Location | chr1:166648194-166648195 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:166646941..166649899-chr1:166808639..166811427,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000143157 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs12122205 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs12133879 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs12137113 | 0.87[EUR][1000 genomes] |
rs12141514 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs3856213 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs6699341 | 0.94[EUR][1000 genomes] |
rs72691693 | 0.87[EUR][1000 genomes] |
rs72701323 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs7522158 | 0.94[EUR][1000 genomes] |
rs7532454 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv916491 | chr1:166000783-166948513 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
2 | esv2757759 | chr1:166491879-166650985 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | esv2758975 | chr1:166491879-166650985 | ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | esv2752389 | chr1:166625342-166706342 | Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv947550 | chr1:166647096-166673303 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |