Variant report

Variant	rs12141468
Chromosome Location	chr1:57534135-57534136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12132369	1.00[AMR][1000 genomes]
rs1855377	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv428752	chr1:57455083-57605082	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57527400-57534800	Weak transcription	Liver	Liver
2	chr1:57530800-57548000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:57532200-57534200	Enhancers	Fetal Heart	heart
4	chr1:57532800-57534200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:57533000-57534200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr1:57533000-57538400	Weak transcription	Fetal Brain Female	brain
7	chr1:57533600-57538400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr1:57533800-57534200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:57533800-57535000	Weak transcription	Fetal Brain Male	brain
10	chr1:57533800-57537800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr1:57534000-57534800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:57534000-57536600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:57534000-57551000	Weak transcription	Fetal Intestine Small	intestine
14	chr1:57534000-57552600	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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