Variant report

Variant	rs12141630
Chromosome Location	chr1:156336687-156336688
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
RHBG	TF binding region
ENSG00000163468	Chromatin interaction
ENSG00000272068	Chromatin interaction
ENSG00000132692	Chromatin interaction
ENSG00000163467	Chromatin interaction
ENSG00000132677	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11264478	0.84[ASN][1000 genomes]
rs11264479	0.84[ASN][1000 genomes]
rs12129175	0.83[ASN][1000 genomes]
rs12131479	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12135970	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases
2	nsv1011302	chr1:156081561-156532624	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	380 gene(s)	inside rSNPs	diseases
3	nsv915822	chr1:156226286-156651655	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	367 gene(s)	inside rSNPs	diseases
4	nsv872471	chr1:156287360-156356480	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv470742	chr1:156335111-156354367	Genic enhancers Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:156335200-156337200	Enhancers	Fetal Intestine Large	intestine
2	chr1:156335600-156337800	Flanking Active TSS	HepG2	liver
3	chr1:156335800-156338600	Weak transcription	Esophagus	oesophagus
4	chr1:156335800-156338600	Enhancers	Fetal Intestine Small	intestine
5	chr1:156336000-156338000	Weak transcription	Pancreas	Pancrea
6	chr1:156336200-156337000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:156336200-156338400	Weak transcription	Ovary	ovary
8	chr1:156336400-156337200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:156336400-156339000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:156336600-156336800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr1:156336600-156336800	Enhancers	Liver	Liver
12	chr1:156336600-156337000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:156336600-156337000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:156336600-156337200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:156336600-156337400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr1:156336600-156338000	Enhancers	A549	lung
17	chr1:156336600-156338200	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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