Variant report

Variant	rs12143405
Chromosome Location	chr1:69278274-69278275
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34917276	0.94[EUR][1000 genomes]
rs7512842	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527722	chr1:69212053-69323222	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69274400-69279800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:69277200-69278800	Enhancers	Fetal Brain Female	brain
3	chr1:69277400-69279600	Enhancers	Brain Germinal Matrix	brain
4	chr1:69277600-69279800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:69278000-69278800	Weak transcription	Fetal Brain Male	brain
6	chr1:69278000-69279600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:69278200-69278400	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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