The 2.0 version of rSNPBase

Variant report

Variant rs12144357
Chromosome Location chr1:214489177-214489178
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214456400-214491800 Weak transcription Pancreas Pancrea
2 chr1:214459200-214491400 Weak transcription Duodenum Mucosa Duodenum
3 chr1:214462000-214491800 Weak transcription NHEK skin
4 chr1:214471000-214489400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
5 chr1:214471000-214517400 Weak transcription Fetal Kidney kidney
6 chr1:214476600-214492200 Weak transcription K562 blood
7 chr1:214477000-214489800 Weak transcription NH-A brain
8 chr1:214477200-214491600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr1:214477200-214492200 Weak transcription Aorta Aorta
10 chr1:214477400-214489800 Weak transcription NHLF lung
11 chr1:214477400-214492200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
12 chr1:214477400-214506400 Weak transcription Colon Smooth Muscle Colon
13 chr1:214477400-214506400 Weak transcription Duodenum Smooth Muscle Duodenum
14 chr1:214477400-214511000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr1:214478800-214491800 Weak transcription Spleen Spleen
16 chr1:214478800-214492200 Weak transcription Esophagus oesophagus
17 chr1:214479000-214503000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
18 chr1:214479200-214491800 Weak transcription Lung lung
19 chr1:214479400-214493000 Enhancers Fetal Heart heart
20 chr1:214479800-214490000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr1:214480200-214490800 Weak transcription Fetal Intestine Small intestine
22 chr1:214482200-214510600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr1:214483000-214490400 Enhancers Liver Liver
24 chr1:214483600-214492200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
25 chr1:214483600-214501600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
26 chr1:214483800-214489800 Weak transcription Osteobl bone
27 chr1:214484000-214490000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr1:214484400-214499800 Weak transcription Primary hematopoietic stem cells blood
29 chr1:214484400-214510800 Weak transcription Cortex derived primary cultured neurospheres brain
30 chr1:214484600-214490600 Weak transcription GM12878-XiMat blood
31 chr1:214484800-214491800 Weak transcription Primary T killer naive cells fromperipheralblood blood
32 chr1:214484800-214492200 Weak transcription Primary monocytes fromperipheralblood blood
33 chr1:214484800-214501800 Weak transcription Primary T helper naive cells from peripheral blood blood
34 chr1:214484800-214507800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
35 chr1:214484800-214522000 Weak transcription Primary T killer memory cells from peripheral blood blood
36 chr1:214485000-214491200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
37 chr1:214485000-214492200 Weak transcription Fetal Brain Female brain
38 chr1:214485000-214506400 Weak transcription Rectal Smooth Muscle rectum
39 chr1:214485000-214513200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
40 chr1:214485600-214499600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr1:214485800-214499600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr1:214486000-214490000 Weak transcription HSMM muscle
43 chr1:214486000-214492400 Weak transcription Brain Inferior Temporal Lobe brain
44 chr1:214486200-214491600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
45 chr1:214486200-214526000 Weak transcription Psoas Muscle Psoas
46 chr1:214486400-214489400 Strong transcription Breast Myoepithelial Primary Cells Breast
47 chr1:214486400-214489600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
48 chr1:214486400-214490000 Strong transcription HepG2 liver
49 chr1:214486600-214489800 Strong transcription Primary T helper naive cells fromperipheralblood blood
50 chr1:214486800-214489800 Weak transcription Placenta Amnion Placenta Amnion

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Last update: Aug 31, 2015