Variant report

Variant	rs12146041
Chromosome Location	chr1:175102161-175102162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:175101804..175105264-chr1:175106246..175109650,3	K562	blood:
2	chr1:175101221..175103304-chr1:175107956..175109650,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10753089	0.83[CHB][hapmap]
rs10912889	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10912892	0.80[AFR][1000 genomes]
rs12563833	0.92[MEX][hapmap]
rs1476062	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16847836	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2006189	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2072041	0.83[CHB][hapmap]
rs2269653	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2285215	0.83[CHB][hapmap]
rs4651323	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6691774	0.83[CHB][hapmap]
rs6695536	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825487	chr1:175031609-175113572	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv508648	chr1:175056387-175121913	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12146041	C1orf156	cis	parietal	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175095800-175102600	Enhancers	Stomach Smooth Muscle	stomach
2	chr1:175096400-175102600	Enhancers	Colon Smooth Muscle	Colon
3	chr1:175097200-175103000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:175097800-175103400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:175099200-175102800	Weak transcription	Stomach Mucosa	stomach
6	chr1:175099200-175103200	Enhancers	Rectal Smooth Muscle	rectum
7	chr1:175099400-175103000	Weak transcription	Spleen	Spleen
8	chr1:175099800-175103000	Weak transcription	Lung	lung
9	chr1:175100000-175105400	Weak transcription	Liver	Liver
10	chr1:175100000-175105800	Weak transcription	Adipose Nuclei	Adipose
11	chr1:175100200-175103200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:175100400-175103000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr1:175100400-175105200	Enhancers	GM12878-XiMat	blood
14	chr1:175101000-175102400	Enhancers	HSMM	muscle
15	chr1:175101000-175102800	Enhancers	Fetal Lung	lung
16	chr1:175101200-175102200	Enhancers	Osteobl	bone
17	chr1:175101200-175102400	Enhancers	HSMMtube	muscle
18	chr1:175101200-175103000	Enhancers	NHDF-Ad	bronchial
19	chr1:175101200-175103200	Enhancers	Aorta	Aorta
20	chr1:175101400-175102200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:175101600-175102400	Enhancers	Right Ventricle	heart
22	chr1:175101600-175102800	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr1:175101800-175102200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr1:175101800-175102200	Weak transcription	NHLF	lung
25	chr1:175102000-175102200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:175102000-175102200	Weak transcription	Left Ventricle	heart
27	chr1:175102000-175102800	Weak transcription	Right Atrium	heart
28	chr1:175102000-175103000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr1:175102000-175103000	Weak transcription	NH-A	brain
30	chr1:175102000-175107600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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