Variant report

Variant	rs12146796
Chromosome Location	chr12:60018133-60018134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:60013598..60016258-chr12:60017696..60019251,2	MCF-7	breast:
2	chr12:60017381..60019392-chr12:60100051..60102873,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11173117	1.00[AMR][1000 genomes]
rs11173150	1.00[AMR][1000 genomes]
rs11520095	1.00[AMR][1000 genomes]
rs12367883	1.00[CEU][hapmap]
rs12372155	1.00[AMR][1000 genomes]
rs34323348	1.00[AFR][1000 genomes]
rs61935581	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv899131	chr12:59942122-60124089	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1048949	chr12:59974039-60041477	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1038100	chr12:59983391-60018745	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv976033	chr12:60016137-60023992	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60006200-60019400	Weak transcription	Thymus	Thymus
2	chr12:60006400-60031400	Weak transcription	Left Ventricle	heart
3	chr12:60007200-60031600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr12:60009600-60020400	Weak transcription	NHDF-Ad	bronchial
5	chr12:60009800-60033200	Weak transcription	Ovary	ovary
6	chr12:60013000-60021200	Weak transcription	NHLF	lung
7	chr12:60013600-60055400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr12:60014400-60018600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr12:60014400-60023800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr12:60014400-60037400	Weak transcription	Primary T cells from cord blood	blood
11	chr12:60014600-60026200	Weak transcription	Aorta	Aorta
12	chr12:60015000-60018400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr12:60015000-60020200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr12:60015200-60018600	Weak transcription	Pancreas	Pancrea
15	chr12:60015200-60024800	Weak transcription	Adipose Nuclei	Adipose
16	chr12:60015200-60027600	Weak transcription	Primary B cells from peripheral blood	blood
17	chr12:60015200-60030400	Weak transcription	Fetal Heart	heart
18	chr12:60015200-60037400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr12:60015200-60038000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr12:60015400-60021800	Weak transcription	Primary B cells from cord blood	blood
21	chr12:60015400-60023200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr12:60015400-60038000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr12:60015800-60020600	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr12:60016000-60018200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr12:60016000-60018400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr12:60016600-60022200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr12:60017400-60019200	Enhancers	Primary T helper cells PMA-I stimulated	--

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