Variant report

Variant	rs12147836
Chromosome Location	chr14:79176343-79176344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12147576	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17835614	0.94[EUR][1000 genomes]
rs17835635	0.82[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56325306	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61977061	0.83[EUR][1000 genomes]
rs61977072	0.83[EUR][1000 genomes]
rs61992204	0.83[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79165000-79176800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr14:79165000-79181000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:79170800-79176600	Weak transcription	Brain Hippocampus Middle	brain
4	chr14:79175000-79177600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:79175600-79177000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:79175600-79177200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:79175600-79177200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr14:79175800-79176600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr14:79175800-79176600	Enhancers	Brain Anterior Caudate	brain
10	chr14:79175800-79176800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:79175800-79177200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:79175800-79177200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr14:79175800-79178000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr14:79176000-79189000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:79176200-79176600	Enhancers	Brain Substantia Nigra	brain
16	chr14:79176200-79177000	Enhancers	Brain Angular Gyrus	brain
17	chr14:79176200-79177000	Weak transcription	Fetal Kidney	kidney
18	chr14:79176200-79177200	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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