Variant report

Variant	rs12148315
Chromosome Location	chr15:44897494-44897495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44885987..44888786-chr15:44895470..44898152,2	K562	blood:

Variant related genes	Relation type
ENSG00000104133	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28566474	1.00[LWK][hapmap]
rs8023328	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases
2	nsv1516	chr15:44896162-44941091	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44842000-44951600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:44858000-44900200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:44867400-44954600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:44867600-44900000	Weak transcription	Fetal Heart	heart
5	chr15:44870000-44928800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:44871200-44951200	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr15:44871400-44907600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:44871400-44932200	Strong transcription	Fetal Muscle Trunk	muscle
9	chr15:44871600-44903200	Strong transcription	Adipose Nuclei	Adipose
10	chr15:44871600-44917800	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr15:44871800-44924400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:44871800-44925000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:44872000-44903600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:44872000-44935600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:44872200-44923200	Strong transcription	Fetal Intestine Large	intestine
16	chr15:44872400-44934400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr15:44873000-44913400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr15:44873800-44897600	Strong transcription	Fetal Muscle Leg	muscle
19	chr15:44873800-44901400	Strong transcription	Placenta	Placenta
20	chr15:44874400-44900800	Strong transcription	Left Ventricle	heart
21	chr15:44874400-44901000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:44874800-44928600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:44879800-44900200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr15:44881800-44934600	Strong transcription	Liver	Liver
25	chr15:44882000-44908200	Strong transcription	Duodenum Mucosa	Duodenum
26	chr15:44882800-44904600	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr15:44884000-44910000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr15:44885800-44900000	Weak transcription	Fetal Brain Male	brain
29	chr15:44886200-44917600	Strong transcription	Primary B cells from peripheral blood	blood
30	chr15:44888200-44897800	Weak transcription	A549	lung
31	chr15:44888600-44898600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr15:44888600-44900000	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr15:44888600-44900200	Weak transcription	Esophagus	oesophagus
34	chr15:44888600-44906000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr15:44889200-44909200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:44889400-44925600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr15:44890000-44899800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr15:44890000-44905000	Weak transcription	Pancreas	Pancrea
39	chr15:44890000-44954800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr15:44890200-44900000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr15:44890400-44899400	Weak transcription	Right Ventricle	heart
42	chr15:44890400-44900200	Weak transcription	Aorta	Aorta
43	chr15:44890800-44898600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr15:44891000-44899000	Weak transcription	NHLF	lung
45	chr15:44891200-44898600	Weak transcription	Brain Anterior Caudate	brain
46	chr15:44891200-44898600	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr15:44891200-44899200	Weak transcription	Brain Germinal Matrix	brain
48	chr15:44891200-44899200	Weak transcription	Brain Substantia Nigra	brain
49	chr15:44891200-44899200	Weak transcription	Fetal Brain Female	brain
50	chr15:44891200-44899400	Weak transcription	Gastric	stomach

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