Variant report

Variant	rs12148355
Chromosome Location	chr15:75405777-75405778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr15:75404789-75406019	GM12878	blood:	n/a	n/a
2	NFIC	chr15:75404356-75405994	GM12878	blood:	n/a	n/a
3	STAT3	chr15:75404812-75405848	GM12878	blood:	n/a	n/a
4	FOXM1	chr15:75405075-75405787	GM12878	blood:	n/a	n/a
5	KAP1	chr15:75404822-75406043	K562	blood:	n/a	n/a
6	RCOR1	chr15:75404710-75405896	GM12878	blood:	n/a	n/a
7	EBF1	chr15:75404885-75405815	GM12878	blood:	n/a	chr15:75405442-75405453
8	MTA3	chr15:75404476-75405885	GM12878	blood:	n/a	n/a
9	PML	chr15:75404666-75405867	GM12878	blood:	n/a	chr15:75404709-75404718
10	ATF2	chr15:75404817-75405788	GM12878	blood:	n/a	n/a
11	JUN	chr15:75404393-75405798	K562	blood:	n/a	chr15:75404707-75404717 chr15:75404707-75404717 chr15:75404707-75404717 chr15:75404707-75404717 chr15:75404708-75404716
12	CBX3	chr15:75405603-75405893	K562	blood:	n/a	n/a
13	SETDB1	chr15:75405611-75405905	U2OS	brain:	n/a	n/a
14	SPI1	chr15:75405143-75405777	GM12891	blood:	n/a	n/a
15	NFIC	chr15:75404475-75405883	GM12878	blood:	n/a	n/a
16	TBP	chr15:75404959-75405787	GM12878	blood:	n/a	n/a
17	RAD21	chr15:75404745-75405830	GM12878	blood:	n/a	n/a
18	RUNX3	chr15:75404609-75405919	GM12878	blood:	n/a	n/a
19	CBX3	chr15:75405399-75405950	K562	blood:	n/a	n/a
20	IKZF1	chr15:75404633-75405872	GM12878	blood:	n/a	n/a
21	CEBPB	chr15:75405059-75405880	GM12878	blood:	n/a	n/a
22	ZNF384	chr15:75405067-75405812	GM12878	blood:	n/a	n/a
23	RUNX3	chr15:75404628-75405787	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75405088..75407275-chr15:75491436..75494556,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260152	TF binding region
ENSG00000167173	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12591175	0.80[ASN][1000 genomes]
rs3743212	0.84[ASN][1000 genomes]
rs3816261	0.80[ASN][1000 genomes]
rs59303424	0.82[ASN][1000 genomes]
rs6495146	0.82[ASN][1000 genomes]
rs7166105	0.81[ASN][1000 genomes]
rs7177109	0.82[ASN][1000 genomes]
rs72475969	0.82[ASN][1000 genomes]
rs73432941	0.82[ASN][1000 genomes]
rs73438554	0.81[ASN][1000 genomes]
rs73438569	0.82[ASN][1000 genomes]
rs74023935	0.82[ASN][1000 genomes]
rs8024931	0.88[ASN][1000 genomes]
rs8033125	0.84[ASN][1000 genomes]
rs8038365	0.84[ASN][1000 genomes]
rs8039433	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv457205	chr15:75336729-75447773	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv569994	chr15:75336729-75447773	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
7	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75395600-75405800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:75396600-75406200	Enhancers	Primary B cells from cord blood	blood
3	chr15:75397600-75406800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:75397600-75415800	Weak transcription	Ovary	ovary
5	chr15:75401200-75430600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:75401800-75408000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:75402200-75406000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:75402400-75406600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr15:75402400-75406600	Weak transcription	Lung	lung
10	chr15:75402600-75406600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:75403600-75406600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr15:75403800-75406000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:75403800-75406600	Weak transcription	Spleen	Spleen
14	chr15:75404400-75405800	Flanking Active TSS	GM12878-XiMat	blood
15	chr15:75404400-75406000	Enhancers	Fetal Intestine Small	intestine
16	chr15:75404400-75406200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr15:75405200-75407000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr15:75405400-75406800	Weak transcription	HepG2	liver
19	chr15:75405400-75407200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
20	chr15:75405400-75407400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr15:75405400-75407400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
22	chr15:75405400-75408000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr15:75405600-75405800	Enhancers	K562	blood
24	chr15:75405600-75406600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr15:75405600-75406800	Weak transcription	Hela-S3	cervix

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