Variant report

Variant	rs12148859
Chromosome Location	chr15:38982646-38982647
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:38982044..38984974-chr15:38985840..38987447,2	MCF-7	breast:
2	chr15:38804622..38806263-chr15:38982156..38985166,3	K562	blood:
3	chr15:38974727..38979179-chr15:38980706..38984151,5	K562	blood:
4	chr15:38853540..38858003-chr15:38979114..38983225,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172575	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12898460	0.83[ASN][1000 genomes]
rs12903120	0.83[ASN][1000 genomes]
rs12912251	0.83[ASN][1000 genomes]
rs35102843	0.83[ASN][1000 genomes]
rs71403553	0.83[ASN][1000 genomes]
rs7163869	0.81[ASN][1000 genomes]
rs7165988	0.83[ASN][1000 genomes]
rs7171233	0.83[ASN][1000 genomes]
rs7174485	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949171	chr15:38232548-39033746	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv904085	chr15:38786114-38985513	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv525770	chr15:38816833-39084956	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1054651	chr15:38827825-39082844	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv542358	chr15:38827825-39082844	Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:38973600-38984200	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr15:38974000-38983800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr15:38974400-38983200	Enhancers	Primary T cells fromperipheralblood	blood
4	chr15:38974400-38984800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr15:38974800-38983800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:38974800-38983800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr15:38975000-38983000	Enhancers	Fetal Thymus	thymus
8	chr15:38975200-38983400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr15:38976800-38987200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr15:38978800-38990800	Weak transcription	Right Atrium	heart
11	chr15:38979000-38984600	Enhancers	Primary T cells from cord blood	blood
12	chr15:38979200-38983400	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr15:38980400-38983000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:38980600-38983200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr15:38980600-38984200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:38980800-38984400	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr15:38981000-38983400	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr15:38981000-38984400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:38981200-38983400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr15:38981400-38984600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr15:38982200-38983200	Flanking Active TSS	GM12878-XiMat	blood
22	chr15:38982400-38982800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:38982400-38982800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
24	chr15:38982400-38988000	Weak transcription	Thymus	Thymus
25	chr15:38982600-38982800	Enhancers	Pancreatic Islets	Pancreatic Islet

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