Variant report

Variant	rs12149827
Chromosome Location	chr16:81517425-81517426
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81513398..81515319-chr16:81515579..81518063,2	MCF-7	breast:
2	chr16:81515811..81518675-chr16:81530848..81533048,2	MCF-7	breast:
3	chr16:81516881..81521971-chr16:81523389..81527475,7	MCF-7	breast:
4	chr16:81515266..81518031-chr16:81784330..81786216,2	K562	blood:
5	chr16:81515452..81518298-chr16:81547120..81549781,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11859878	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11862295	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11865163	1.00[CEU][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9934612	0.82[AMR][1000 genomes]
rs9937466	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv907010	chr16:81488893-81534790	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv573359	chr16:81509279-81525637	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1057791	chr16:81515036-81644651	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv542993	chr16:81515036-81644651	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81486600-81525200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr16:81504000-81517800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr16:81504200-81518200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr16:81505200-81525600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr16:81505400-81521800	Weak transcription	Fetal Kidney	kidney
6	chr16:81505800-81523600	Weak transcription	Fetal Brain Male	brain
7	chr16:81506000-81546600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr16:81506600-81547000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr16:81506800-81517600	Weak transcription	HMEC	breast
10	chr16:81507600-81518400	Enhancers	Spleen	Spleen
11	chr16:81507800-81519400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr16:81508000-81518000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr16:81508600-81519400	Weak transcription	Ovary	ovary
14	chr16:81509400-81518000	Enhancers	Primary T cells fromperipheralblood	blood
15	chr16:81509800-81517600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr16:81509800-81518600	Enhancers	Lung	lung
17	chr16:81510000-81518400	Enhancers	Placenta	Placenta
18	chr16:81510000-81518800	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr16:81510400-81522400	Weak transcription	Fetal Brain Female	brain
20	chr16:81510400-81533200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr16:81510600-81518000	Enhancers	Liver	Liver
22	chr16:81510600-81521200	Enhancers	Stomach Mucosa	stomach
23	chr16:81511400-81527000	Enhancers	Fetal Muscle Leg	muscle
24	chr16:81511600-81518200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr16:81512400-81525000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr16:81512800-81518600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr16:81513200-81517800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr16:81513400-81517600	Enhancers	Primary hematopoietic stem cells	blood
29	chr16:81514200-81518400	Enhancers	Gastric	stomach
30	chr16:81514200-81519800	Genic enhancers	Fetal Intestine Small	intestine
31	chr16:81514400-81519800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr16:81514600-81518200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr16:81514800-81518000	Enhancers	Stomach Smooth Muscle	stomach
34	chr16:81514800-81522200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr16:81515000-81521400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr16:81515200-81518000	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr16:81515200-81518800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr16:81515200-81519400	Weak transcription	Brain Angular Gyrus	brain
39	chr16:81515200-81531600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr16:81515200-81532600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr16:81515400-81517600	Enhancers	Muscle Satellite Cultured Cells	--
42	chr16:81515400-81517600	Weak transcription	Brain Anterior Caudate	brain
43	chr16:81515400-81517600	Genic enhancers	HepG2	liver
44	chr16:81515400-81517800	Enhancers	Primary B cells from cord blood	blood
45	chr16:81515400-81518400	Enhancers	Primary B cells from peripheral blood	blood
46	chr16:81515400-81519000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr16:81515400-81519000	Weak transcription	NH-A	brain
48	chr16:81515400-81519600	Weak transcription	NHLF	lung
49	chr16:81515400-81519800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr16:81515400-81519800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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