Variant report

Variant	rs12151379
Chromosome Location	chr2:233917715-233917716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:233914078..233917204-chr2:233917220..233919359,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13017117	1.00[CEU][hapmap]
rs13426624	1.00[EUR][1000 genomes]
rs59929577	1.00[EUR][1000 genomes]
rs73111456	1.00[EUR][1000 genomes]
rs73111460	1.00[EUR][1000 genomes]
rs7577111	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005123	chr2:233227729-233920152	Enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv536173	chr2:233227729-233920152	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv876009	chr2:233799400-233996429	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv876012	chr2:233899377-233996429	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:233914200-233918600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:233914200-233919200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr2:233914400-233918600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr2:233914400-233918800	Weak transcription	HMEC	breast
5	chr2:233914400-233926600	Weak transcription	HSMMtube	muscle
6	chr2:233914600-233918400	Weak transcription	Fetal Thymus	thymus
7	chr2:233914600-233919200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:233914800-233918600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr2:233915000-233918400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr2:233915000-233918600	Weak transcription	Brain Anterior Caudate	brain
11	chr2:233916600-233918200	Weak transcription	Spleen	Spleen
12	chr2:233916600-233918600	Weak transcription	Lung	lung
13	chr2:233916600-233919200	Weak transcription	Osteobl	bone
14	chr2:233916600-233924000	Weak transcription	Esophagus	oesophagus
15	chr2:233916600-233924000	Weak transcription	Right Atrium	heart
16	chr2:233916600-233924600	Weak transcription	Pancreas	Pancrea
17	chr2:233916800-233919000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:233916800-233919000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr2:233916800-233919200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr2:233917000-233918600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr2:233917000-233918600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr2:233917000-233918600	Weak transcription	HUVEC	blood vessel
23	chr2:233917000-233918600	Weak transcription	K562	blood
24	chr2:233917000-233918600	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr2:233917000-233918800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr2:233917000-233925800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr2:233917200-233917800	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr2:233917200-233918400	Weak transcription	Hela-S3	cervix
29	chr2:233917200-233918600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr2:233917200-233918600	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr2:233917200-233918600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr2:233917200-233918600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr2:233917200-233918600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr2:233917200-233918600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr2:233917200-233918800	Weak transcription	NHEK	skin
36	chr2:233917400-233918600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr2:233917400-233926000	Weak transcription	H1 Cell Line	embryonic stem cell

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