Variant report

Variant	rs12151628
Chromosome Location	chr2:186976972-186976973
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10048680	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1021279	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1038587	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10931219	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12151700	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13020131	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1386515	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1487360	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16827526	0.88[AFR][1000 genomes]
rs17332573	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1948103	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1948104	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2046590	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2046593	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2066971	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2171375	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2200590	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2370507	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4384739	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4622676	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6717680	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6747595	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs725727	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs725728	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73979271	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73979274	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73980822	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73980828	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73980830	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7564638	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7567924	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7599104	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs901613	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875545	chr2:186566024-187280164	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv817325	chr2:186625679-187200841	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv868949	chr2:186657142-187327560	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1002243	chr2:186692815-187150225	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv536077	chr2:186692815-187150225	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv932296	chr2:186737443-187265790	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv875547	chr2:186798249-187014815	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv875548	chr2:186798249-187164657	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv584030	chr2:186915437-187001076	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv3329676	chr2:186972495-186994906	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:186966200-186980800	Weak transcription	Small Intestine	intestine
2	chr2:186970400-186981400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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