Variant report

Variant	rs12153149
Chromosome Location	chr5:95962712-95962713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95962343..95964474-chr5:95964579..95968462,3	K562	blood:
2	chr5:95962249..95964002-chr5:95996996..95999798,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153113	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12153685	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17086504	0.82[CEU][hapmap]
rs17398914	0.82[CEU][hapmap]
rs17477045	0.82[CEU][hapmap]
rs17477471	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1024964	chr5:95742124-96065492	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv537811	chr5:95742124-96065492	Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95950400-95963000	Weak transcription	Stomach Mucosa	stomach
2	chr5:95951400-95965000	Weak transcription	HUVEC	blood vessel
3	chr5:95952200-95964600	Weak transcription	Esophagus	oesophagus
4	chr5:95954000-95965400	Weak transcription	Aorta	Aorta
5	chr5:95958400-95965400	Weak transcription	NHLF	lung
6	chr5:95960800-95962800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr5:95961200-95964200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:95961200-95966200	Enhancers	HSMM	muscle
9	chr5:95961200-95966200	Enhancers	NH-A	brain
10	chr5:95961200-95966400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:95961200-95966600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:95961200-95967200	Enhancers	HMEC	breast
13	chr5:95961400-95962800	Enhancers	NHDF-Ad	bronchial
14	chr5:95961400-95964600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:95961400-95967000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:95961600-95963200	Enhancers	Placenta Amnion	Placenta Amnion
17	chr5:95961800-95962800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:95961800-95963200	Enhancers	NHEK	skin
19	chr5:95962000-95966200	Enhancers	HSMMtube	muscle
20	chr5:95962000-95966400	Enhancers	Osteobl	bone
21	chr5:95962200-95963000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:95962200-95964400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr5:95962200-95967000	Enhancers	Muscle Satellite Cultured Cells	--
24	chr5:95962400-95963200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr5:95962400-95963400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr5:95962400-95963400	Enhancers	HepG2	liver
27	chr5:95962400-95965600	Weak transcription	Right Atrium	heart
28	chr5:95962600-95962800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr5:95962600-95963200	Enhancers	A549	lung
30	chr5:95962600-95963400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr5:95962600-95965000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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