Variant report

Variant	rs12153942
Chromosome Location	chr6:24208567-24208568
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1087294	0.85[ASN][1000 genomes]
rs16888894	0.88[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs793845	0.82[ASN][1000 genomes]
rs793847	0.83[ASN][1000 genomes]
rs793853	0.84[ASN][1000 genomes]
rs793861	0.89[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs793862	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv601146	chr6:24166233-24215665	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24199400-24224600	Weak transcription	Pancreas	Pancrea
2	chr6:24206200-24231400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:24206800-24227600	Weak transcription	Fetal Kidney	kidney
4	chr6:24207000-24209400	Enhancers	Brain Germinal Matrix	brain
5	chr6:24207800-24208600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:24207800-24208600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:24207800-24209000	Enhancers	HepG2	liver
8	chr6:24208400-24212800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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