Variant report

Variant	rs12154235
Chromosome Location	chr7:20076502-20076503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10247632	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10263340	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10268448	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17142321	0.84[ASN][1000 genomes]
rs38129	0.82[EUR][1000 genomes]
rs38136	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs38137	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs38138	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59439583	0.82[ASN][1000 genomes]
rs6461473	0.87[ASN][1000 genomes]
rs6953051	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7796210	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033223	chr7:19682192-20461375	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv538795	chr7:19682192-20461375	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1027445	chr7:19947297-20211733	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv887830	chr7:19970584-20114589	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1027849	chr7:20003094-20084998	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2762658	chr7:20023224-20127561	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1023992	chr7:20053816-20104675	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:20067000-20092800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:20068200-20077200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:20073000-20080600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:20073400-20077200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:20073800-20080600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:20074000-20082200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:20074400-20078000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:20075200-20079000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:20075400-20078200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:20075400-20084800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:20075400-20086000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:20075400-20088600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:20075600-20082400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr7:20076000-20078600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr7:20076000-20090200	Weak transcription	H1 Cell Line	embryonic stem cell

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