Variant report

Variant	rs12155126
Chromosome Location	chr7:121897465-121897466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10953952	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11521039	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11762921	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11763733	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11765219	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11772230	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12374930	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1995328	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2019876	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55818404	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56318514	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57562127	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60116323	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62474306	0.85[EUR][1000 genomes]
rs62474307	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs661702	0.96[ASN][1000 genomes]
rs7802078	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034624	chr7:121813180-121899703	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1028221	chr7:121818974-121899162	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1024868	chr7:121818974-121899703	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1024364	chr7:121843701-121916791	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1020645	chr7:121843701-121929598	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1034945	chr7:121843701-121933166	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121895600-121900400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:121896000-121900200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:121896000-121901400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:121896400-121900200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:121896400-121900400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:121896400-121900400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:121896600-121898400	Enhancers	Placenta	Placenta
8	chr7:121896600-121900200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:121896800-121900200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:121896800-121900400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:121896800-121900600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links