Variant report

Variant	rs12155299
Chromosome Location	chr7:124370982-124370983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1008290	0.93[ASN][1000 genomes]
rs17147398	0.82[EUR][1000 genomes]
rs2158676	0.93[ASN][1000 genomes]
rs2299904	0.81[ASN][1000 genomes]
rs2896357	0.93[ASN][1000 genomes]
rs4577901	0.93[ASN][1000 genomes]
rs6977430	0.93[ASN][1000 genomes]
rs717241	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73443822	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9641745	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv1027091	chr7:124311742-124388908	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3446198	chr7:124358002-124586856	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv1802433	chr7:124365503-124385252	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124370200-124374800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:124370400-124376200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:124370600-124371000	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr7:124370600-124374800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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