Variant report

Variant	rs12155945
Chromosome Location	chr8:96214292-96214293
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000253773	TF binding region
ENSG00000253773	Chromatin interaction
ENSG00000156172	Chromatin interaction
ENSG00000253351	Chromatin interaction
ENSG00000175895	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12155751	0.85[ASN][1000 genomes]
rs12545256	0.85[ASN][1000 genomes]
rs13256395	0.85[ASN][1000 genomes]
rs13274086	0.85[ASN][1000 genomes]
rs56001003	0.84[ASN][1000 genomes]
rs62522644	0.84[ASN][1000 genomes]
rs62522646	0.84[ASN][1000 genomes]
rs62524832	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7817880	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7836889	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv523655	chr8:96205920-96239113	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv16466	chr8:96206151-96243934	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv516035	chr8:96208726-96235451	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv465740	chr8:96211820-96235451	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv611758	chr8:96211820-96235451	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12155945	SLC26A7	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96206400-96215000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:96208600-96216400	Weak transcription	Gastric	stomach
3	chr8:96209000-96220000	Weak transcription	Right Ventricle	heart
4	chr8:96210200-96214600	Enhancers	Hela-S3	cervix
5	chr8:96212000-96218000	Enhancers	Primary B cells from peripheral blood	blood
6	chr8:96212400-96214600	Enhancers	K562	blood
7	chr8:96212400-96217000	Enhancers	Fetal Thymus	thymus
8	chr8:96212800-96214400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:96212800-96215600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:96213000-96215200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr8:96213000-96216200	Weak transcription	Pancreas	Pancrea
12	chr8:96213200-96214800	Weak transcription	Primary B cells from cord blood	blood
13	chr8:96213600-96214600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:96213800-96215200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:96213800-96215800	Enhancers	Thymus	Thymus
16	chr8:96214000-96214600	Enhancers	Placenta	Placenta
17	chr8:96214000-96217000	Enhancers	HepG2	liver
18	chr8:96214200-96220000	Weak transcription	HMEC	breast
19	chr8:96214200-96226400	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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