Variant report

Variant	rs12156586
Chromosome Location	chr9:96725631-96725632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96581901..96582443-chr9:96724981..96725856,2	MCF-7	breast:
2	chr9:96656015..96657684-chr9:96723768..96726547,2	MCF-7	breast:
3	chr9:96671163..96671742-chr9:96725208..96725792,2	MCF-7	breast:
4	chr9:96582647..96583512-chr9:96725049..96725919,3	MCF-7	breast:
5	chr9:96712713..96719267-chr9:96721537..96727951,10	MCF-7	breast:
6	chr9:96674702..96676543-chr9:96724873..96726532,2	K562	blood:
7	chr9:95921974..95922852-chr9:96725322..96725880,3	K562	blood:
8	chr9:96444128..96445167-chr9:96724637..96725907,10	K562	blood:
9	chr9:96444155..96444970-chr9:96725446..96726134,3	MCF-7	breast:
10	chr9:96447198..96448012-chr9:96724180..96725782,4	MCF-7	breast:
11	chr9:96582631..96583817-chr9:96724571..96725838,5	MCF-7	breast:
12	chr9:96447168..96447681-chr9:96724934..96725916,2	K562	blood:
13	chr9:96724820..96727040-chr9:96730080..96732897,2	K562	blood:
14	chr9:96443153..96443849-chr9:96725175..96725852,2	K562	blood:
15	chr9:96622372..96623312-chr9:96724925..96725807,3	MCF-7	breast:
16	chr9:96672827..96673633-chr9:96725329..96725969,2	K562	blood:
17	chr9:96593842..96594413-chr9:96724983..96725802,2	MCF-7	breast:
18	chr9:96725158..96725897-chr9:96975460..96976466,4	K562	blood:
19	chr9:96718522..96721455-chr9:96725392..96727968,2	MCF-7	breast:
20	chr9:96444184..96445089-chr9:96724737..96725876,7	MCF-7	breast:
21	chr9:96671241..96673198-chr9:96724070..96726611,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000131668	Chromatin interaction
ENSG00000235601	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11515595	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv893590	chr9:96701287-96729129	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96723000-96725800	Flanking Active TSS	Stomach Smooth Muscle	stomach
2	chr9:96723000-96728800	Weak transcription	Pancreas	Pancrea
3	chr9:96723000-96729800	Weak transcription	Gastric	stomach
4	chr9:96724200-96725800	Enhancers	Fetal Stomach	stomach
5	chr9:96724800-96725800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr9:96724800-96725800	Enhancers	Colon Smooth Muscle	Colon
7	chr9:96724800-96726400	Enhancers	Placenta	Placenta
8	chr9:96725000-96725800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr9:96725000-96725800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
10	chr9:96725000-96725800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
11	chr9:96725000-96725800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr9:96725000-96725800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr9:96725000-96725800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr9:96725000-96725800	Enhancers	Liver	Liver
15	chr9:96725000-96725800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
16	chr9:96725000-96725800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
17	chr9:96725000-96725800	Bivalent Enhancer	Fetal Intestine Large	intestine
18	chr9:96725000-96725800	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr9:96725000-96725800	Enhancers	K562	blood
20	chr9:96725000-96726600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr9:96725000-96726800	Bivalent Enhancer	Fetal Muscle Leg	muscle
22	chr9:96725000-96727400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:96725200-96725800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
24	chr9:96725200-96725800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
25	chr9:96725200-96725800	Enhancers	Rectal Smooth Muscle	rectum
26	chr9:96725400-96725800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:96725400-96725800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr9:96725400-96725800	Flanking Active TSS	Brain Anterior Caudate	brain
29	chr9:96725400-96725800	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
30	chr9:96725400-96725800	Bivalent Enhancer	Fetal Lung	lung
31	chr9:96725400-96725800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
32	chr9:96725400-96730800	Weak transcription	Stomach Mucosa	stomach
33	chr9:96725600-96725800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
34	chr9:96725600-96725800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr9:96725600-96725800	Flanking Active TSS	Brain Cingulate Gyrus	brain
36	chr9:96725600-96725800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
37	chr9:96725600-96725800	Enhancers	Fetal Kidney	kidney
38	chr9:96725600-96725800	Enhancers	HepG2	liver
39	chr9:96725600-96725800	Flanking Active TSS	HSMM	muscle

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