Variant report

Variant	rs1215755
Chromosome Location	chr12:106644427-106644428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106634944..106646449-chr12:106667585..106679535,27	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238609	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1148420	0.92[ASN][1000 genomes]
rs1148424	0.92[ASN][1000 genomes]
rs1148425	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1215754	0.92[ASN][1000 genomes]
rs1230058	0.92[ASN][1000 genomes]
rs12711453	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12823591	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2704897	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2704899	0.92[ASN][1000 genomes]
rs2912748	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2912749	0.92[ASN][1000 genomes]
rs2936702	0.92[ASN][1000 genomes]
rs2952114	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799917	chr12:106637876-106649988	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1834434	chr12:106637876-106649988	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106642800-106645400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:106642800-106647600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:106642800-106647800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr12:106642800-106648400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr12:106643000-106645200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr12:106643000-106646400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr12:106643000-106647800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr12:106643200-106644800	Weak transcription	HSMMtube	muscle
9	chr12:106643200-106645000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr12:106643200-106645000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr12:106643200-106645200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr12:106643200-106645200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr12:106643200-106645400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:106643200-106645400	Weak transcription	Brain Substantia Nigra	brain
15	chr12:106643200-106645400	Weak transcription	HSMM	muscle
16	chr12:106643200-106645600	Weak transcription	NHLF	lung
17	chr12:106643200-106645800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr12:106643200-106645800	Enhancers	Primary B cells from peripheral blood	blood
19	chr12:106643200-106646600	Weak transcription	NHEK	skin
20	chr12:106643200-106647200	Weak transcription	Aorta	Aorta
21	chr12:106643200-106647800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr12:106643200-106647800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr12:106643200-106647800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr12:106643200-106648800	Weak transcription	Right Atrium	heart
25	chr12:106643400-106644600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr12:106643400-106644800	Weak transcription	NHDF-Ad	bronchial
27	chr12:106643400-106645000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr12:106643400-106645000	Weak transcription	Fetal Kidney	kidney
29	chr12:106643400-106645000	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr12:106643400-106645000	Weak transcription	Osteobl	bone
31	chr12:106643400-106645200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr12:106643400-106645200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr12:106643400-106645400	Weak transcription	Spleen	Spleen
34	chr12:106643400-106648400	Weak transcription	Fetal Lung	lung
35	chr12:106643400-106648400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr12:106643600-106644600	Weak transcription	Primary hematopoietic stem cells	blood
37	chr12:106643600-106645000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr12:106643600-106645200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr12:106643800-106645000	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr12:106643800-106645400	Weak transcription	Placenta	Placenta
41	chr12:106644000-106644800	Enhancers	Primary B cells from cord blood	blood
42	chr12:106644000-106645000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr12:106644000-106645400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr12:106644000-106645800	Weak transcription	Left Ventricle	heart
45	chr12:106644000-106648200	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr12:106644200-106645200	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr12:106644200-106645400	Weak transcription	Ovary	ovary
48	chr12:106644200-106646000	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr12:106644200-106649800	Weak transcription	Fetal Heart	heart
50	chr12:106644400-106644600	Enhancers	Colonic Mucosa	Colon

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