Variant report

Variant	rs12165114
Chromosome Location	chr19:42892863-42892864
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:42892157..42894353-chr19:42898582..42900321,2	MCF-7	breast:
2	chr19:42886045..42887590-chr19:42890896..42893115,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10401235	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10402404	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10402677	0.82[CHB][hapmap]
rs10408368	0.81[EUR][1000 genomes]
rs10469285	0.82[CHB][hapmap]
rs11671846	0.82[CHB][hapmap]
rs11673645	0.82[CHB][hapmap]
rs11882625	0.81[EUR][1000 genomes]
rs13345314	0.81[AMR][1000 genomes]
rs13346080	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13347104	0.81[EUR][1000 genomes]
rs28480505	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3810147	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7257910	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73556315	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8102519	0.82[CHB][hapmap]
rs8103285	0.82[CHB][hapmap]
rs8104272	0.81[EUR][1000 genomes]
rs8107152	0.82[CHB][hapmap]
rs8108964	1.00[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv520239	chr19:42357455-42931004	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv911782	chr19:42514712-42931004	Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
4	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
5	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
6	nsv911785	chr19:42741124-42917545	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
7	nsv911788	chr19:42887492-42930652	Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42891600-42893200	Weak transcription	Spleen	Spleen
2	chr19:42891800-42900800	Weak transcription	Right Atrium	heart
3	chr19:42892000-42895200	Weak transcription	Hela-S3	cervix
4	chr19:42892000-42900200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr19:42892600-42895600	Active TSS	Esophagus	oesophagus
6	chr19:42892800-42893000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
7	chr19:42892800-42893600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr19:42892800-42893800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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