Variant report

Variant	rs12165190
Chromosome Location	chr2:85724995-85724996
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10196363	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13420118	1.00[EUR][1000 genomes]
rs13420256	1.00[EUR][1000 genomes]
rs28805618	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35300715	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4331503	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71411829	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73943229	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9973557	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005351	chr2:85242657-85774909	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	198 gene(s)	inside rSNPs	diseases
2	nsv535803	chr2:85242657-85774909	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	198 gene(s)	inside rSNPs	diseases
3	nsv834283	chr2:85609500-85755708	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv979031	chr2:85709070-85727517	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:85717600-85726000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:85718600-85725400	Weak transcription	A549	lung
3	chr2:85718800-85725000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:85722200-85727400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:85722600-85725000	Enhancers	Fetal Intestine Large	intestine
6	chr2:85722600-85727400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr2:85723600-85726000	Weak transcription	Left Ventricle	heart
8	chr2:85723800-85730600	Weak transcription	Small Intestine	intestine
9	chr2:85724000-85725600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr2:85724000-85726000	Weak transcription	HepG2	liver
11	chr2:85724400-85725000	Enhancers	K562	blood
12	chr2:85724800-85725800	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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