Variant report

Variant	rs12166434
Chromosome Location	chr22:29227167-29227168
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:29226187..29227973-chr22:29425770..29428357,2	MCF-7	breast:
2	chr22:29218595..29221875-chr22:29223900..29227184,8	MCF-7	breast:
3	chr22:29226520..29228881-chr22:29235030..29237241,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-XBP1-1	chr22:29227139-29227247	XLOC_014334

Variant related genes	Relation type
ENSG00000177993	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12169315	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv834169	chr22:29095446-29303929	Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29197200-29231600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr22:29198600-29231400	Weak transcription	HSMMtube	muscle
3	chr22:29198800-29230800	Weak transcription	NHEK	skin
4	chr22:29200600-29231400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr22:29214800-29242200	Weak transcription	Aorta	Aorta
6	chr22:29215600-29231600	Weak transcription	Right Ventricle	heart
7	chr22:29216000-29227600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr22:29216000-29231600	Weak transcription	Placenta	Placenta
9	chr22:29216000-29232800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr22:29216000-29233800	Weak transcription	Left Ventricle	heart
11	chr22:29216000-29238600	Weak transcription	Spleen	Spleen
12	chr22:29216200-29227600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr22:29218200-29231800	Weak transcription	Gastric	stomach
14	chr22:29219400-29234800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr22:29219600-29231800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr22:29223200-29227800	Weak transcription	Fetal Stomach	stomach
17	chr22:29224000-29237400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr22:29224200-29228200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr22:29225200-29227200	Enhancers	Fetal Intestine Small	intestine
20	chr22:29225400-29242000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr22:29225800-29227200	Enhancers	Liver	Liver
22	chr22:29225800-29228800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr22:29225800-29229000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr22:29225800-29231600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr22:29225800-29231800	Weak transcription	HSMM	muscle
26	chr22:29225800-29233000	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr22:29226000-29228200	Weak transcription	Brain Anterior Caudate	brain
28	chr22:29226000-29229000	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr22:29226000-29229000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr22:29226000-29229200	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr22:29226000-29229600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr22:29226000-29230000	Weak transcription	Primary hematopoietic stem cells	blood
33	chr22:29226000-29231600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr22:29226000-29233000	Weak transcription	Dnd41	blood
35	chr22:29226000-29248800	Weak transcription	Primary T cells from cord blood	blood
36	chr22:29226200-29227800	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr22:29226200-29230000	Weak transcription	Fetal Thymus	thymus
38	chr22:29226200-29230200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr22:29226200-29234600	Weak transcription	Brain Substantia Nigra	brain
40	chr22:29226200-29234800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr22:29226200-29239600	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr22:29226200-29242800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr22:29226400-29227400	Weak transcription	Stomach Mucosa	stomach
44	chr22:29226400-29231600	Weak transcription	Pancreas	Pancrea
45	chr22:29226400-29231600	Weak transcription	Thymus	Thymus
46	chr22:29226600-29228000	Enhancers	HepG2	liver
47	chr22:29226600-29231800	Weak transcription	Fetal Intestine Large	intestine
48	chr22:29226600-29241800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr22:29226600-29242200	Weak transcription	Fetal Muscle Leg	muscle
50	chr22:29227000-29227400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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