Variant report

Variant	rs12170952
Chromosome Location	chr22:30868814-30868815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829171	chr22:30598030-31043578	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30866800-30869400	Enhancers	Liver	Liver
2	chr22:30867600-30869400	Enhancers	Lung	lung
3	chr22:30868000-30869600	Enhancers	Esophagus	oesophagus
4	chr22:30868200-30869600	Enhancers	Hela-S3	cervix
5	chr22:30868200-30872000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr22:30868600-30869400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr22:30868600-30869600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr22:30868600-30870800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr22:30868800-30869200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr22:30868800-30869200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr22:30868800-30869400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr22:30868800-30869400	Enhancers	HSMMtube	muscle
13	chr22:30868800-30869600	Enhancers	HMEC	breast
14	chr22:30868800-30869600	Bivalent Enhancer	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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