Variant report
| Variant | rs12175029 |
|---|---|
| Chromosome Location | chr6:66248459-66248460 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10944811 | 0.90[CEU][hapmap];0.88[CHB][hapmap] |
| rs10944816 | 0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12190494 | 0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12191952 | 0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12193142 | 0.90[CEU][hapmap] |
| rs12193967 | 0.81[AFR][1000 genomes] |
| rs12660796 | 0.81[AFR][1000 genomes] |
| rs1502989 | 0.81[AFR][1000 genomes] |
| rs1988374 | 0.87[CEU][hapmap];0.89[CHB][hapmap] |
| rs2351260 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs354349 | 0.87[EUR][1000 genomes] |
| rs3904332 | 0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[AFR][1000 genomes] |
| rs55792659 | 0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs66812553 | 0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs67861748 | 0.81[AFR][1000 genomes] |
| rs7349900 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9345649 | 0.88[ASN][1000 genomes] |
| rs9345654 | 0.90[EUR][1000 genomes] |
| rs9354264 | 0.81[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9360133 | 0.88[CEU][hapmap];0.89[CHB][hapmap];0.81[AFR][1000 genomes] |
| rs9363391 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9363393 | 0.81[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9363394 | 0.81[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9363395 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv886012 | chr6:65905998-66354809 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv3447152 | chr6:66027938-66253181 | Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv886029 | chr6:66133281-66333105 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv2763559 | chr6:66201093-66360660 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv470824 | chr6:66214008-66254084 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv603442 | chr6:66221979-66321544 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv1027386 | chr6:66232296-66291442 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:66248400-66248800 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
