Variant report

Variant	rs12181736
Chromosome Location	chr6:33698679-33698680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33684724..33685608-chr6:33698489..33699120,3	MCF-7	breast:
2	chr6:33697484..33700204-chr6:33739217..33741356,2	MCF-7	breast:
3	chr6:33698259..33701003-chr6:33736395..33738930,2	K562	blood:
4	chr6:33697890..33700582-chr6:35133101..35134719,2	MCF-7	breast:
5	chr6:33694998..33697623-chr6:33697893..33701266,3	K562	blood:
6	chr6:33673158..33676456-chr6:33698317..33701048,3	MCF-7	breast:
7	chr6:33697291..33699933-chr6:33725185..33727883,2	MCF-7	breast:
8	chr6:33693493..33694998-chr6:33697111..33699180,2	K562	blood:
9	chr6:33690280..33692789-chr6:33697666..33699553,2	K562	blood:

No data

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2281831	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
2	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
3	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33680000-33705000	Weak transcription	Brain Angular Gyrus	brain
2	chr6:33686200-33700200	Weak transcription	Liver	Liver
3	chr6:33686400-33710600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:33688800-33700000	Strong transcription	HSMM	muscle
5	chr6:33690800-33708200	Weak transcription	Gastric	stomach
6	chr6:33691800-33711600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:33692000-33706800	Weak transcription	Fetal Intestine Small	intestine
8	chr6:33692000-33710200	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:33692600-33699200	Weak transcription	Fetal Lung	lung
10	chr6:33692800-33701000	Weak transcription	Fetal Brain Female	brain
11	chr6:33693200-33700800	Strong transcription	Fetal Muscle Leg	muscle
12	chr6:33693400-33701200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:33693600-33712000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:33694000-33710600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:33694600-33699400	Enhancers	Right Ventricle	heart
16	chr6:33695000-33702400	Weak transcription	Brain Anterior Caudate	brain
17	chr6:33695200-33700000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:33695600-33711800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:33696200-33699200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:33696600-33700400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:33697200-33700400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr6:33697400-33698800	Weak transcription	Psoas Muscle	Psoas
23	chr6:33697800-33700000	Enhancers	Placenta	Placenta
24	chr6:33697800-33701000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:33698000-33698800	Enhancers	K562	blood
26	chr6:33698000-33699400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:33698000-33699600	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
28	chr6:33698000-33700000	Enhancers	Pancreas	Pancrea
29	chr6:33698200-33698800	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
30	chr6:33698200-33700000	Strong transcription	HSMMtube	muscle
31	chr6:33698200-33700400	Enhancers	Lung	lung
32	chr6:33698200-33700600	Enhancers	Right Atrium	heart
33	chr6:33698200-33700800	Genic enhancers	Brain Substantia Nigra	brain
34	chr6:33698200-33700800	Strong transcription	Fetal Muscle Trunk	muscle
35	chr6:33698200-33701600	Genic enhancers	Left Ventricle	heart
36	chr6:33698200-33702400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:33698400-33699000	Genic enhancers	Brain Cingulate Gyrus	brain
38	chr6:33698400-33703000	Enhancers	Placenta Amnion	Placenta Amnion
39	chr6:33698400-33703400	Strong transcription	Spleen	Spleen
40	chr6:33698600-33699000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
41	chr6:33698600-33700400	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr6:33698600-33700800	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr6:33698600-33701200	Genic enhancers	Brain Hippocampus Middle	brain

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