Variant report

Variant	rs12184567
Chromosome Location	chr13:95268598-95268599
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832685	chr13:95179676-95279966	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95254600-95276600	Weak transcription	Small Intestine	intestine
2	chr13:95254600-95284000	Weak transcription	Spleen	Spleen
3	chr13:95254800-95272000	Weak transcription	Lung	lung
4	chr13:95254800-95275400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr13:95254800-95275600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:95254800-95288800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:95255000-95275400	Weak transcription	Aorta	Aorta
8	chr13:95255000-95275600	Weak transcription	Right Ventricle	heart
9	chr13:95255000-95276200	Weak transcription	HSMMtube	muscle
10	chr13:95255000-95281000	Weak transcription	Colonic Mucosa	Colon
11	chr13:95255200-95272200	Weak transcription	Colon Smooth Muscle	Colon
12	chr13:95255200-95276200	Weak transcription	Fetal Brain Female	brain
13	chr13:95255200-95278200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr13:95255200-95282200	Weak transcription	Brain Angular Gyrus	brain
15	chr13:95255400-95288600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr13:95255600-95281800	Weak transcription	Fetal Brain Male	brain
17	chr13:95255600-95282600	Weak transcription	Fetal Heart	heart
18	chr13:95255800-95278000	Weak transcription	Hela-S3	cervix
19	chr13:95255800-95284000	Weak transcription	K562	blood
20	chr13:95255800-95285000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr13:95256600-95272000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr13:95257400-95268600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr13:95257400-95269000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr13:95257600-95268600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr13:95257600-95268600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr13:95259000-95275400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr13:95259600-95275400	Weak transcription	Primary B cells from cord blood	blood
28	chr13:95259600-95275400	Weak transcription	Brain Hippocampus Middle	brain
29	chr13:95259800-95268600	Strong transcription	Dnd41	blood
30	chr13:95259800-95269000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr13:95259800-95275800	Weak transcription	Gastric	stomach
32	chr13:95259800-95276000	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr13:95259800-95282000	Weak transcription	Brain Germinal Matrix	brain
34	chr13:95260000-95270400	Weak transcription	HMEC	breast
35	chr13:95260000-95285800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr13:95260600-95269000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr13:95261200-95272000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr13:95261800-95275400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr13:95262200-95278200	Weak transcription	Brain Substantia Nigra	brain
40	chr13:95262400-95268800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr13:95262600-95268600	Strong transcription	NHDF-Ad	bronchial
42	chr13:95262600-95271000	Weak transcription	Brain Anterior Caudate	brain
43	chr13:95262800-95268800	Strong transcription	Osteobl	bone
44	chr13:95263400-95271400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr13:95263600-95276200	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr13:95264000-95275400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr13:95264000-95275400	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr13:95264000-95284000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr13:95264200-95275400	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr13:95264200-95275400	Weak transcription	H9 Cell Line	embryonic stem cell

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