Variant report

Variant	rs1218659
Chromosome Location	chr1:239712161-239712162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1899617	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1992547	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4659546	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9725018	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002301	chr1:239182255-239774393	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv549435	chr1:239375010-239974006	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3377526	chr1:239623743-240111639	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv873351	chr1:239636613-240324200	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1218659	LOC389705	trans	lymphoblastoid	seeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:239710800-239720600	Weak transcription	Stomach Mucosa	stomach
2	chr1:239711600-239712200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr1:239711600-239713400	Weak transcription	Right Atrium	heart
4	chr1:239711600-239718400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:239711800-239712200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr1:239711800-239712200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:239711800-239712200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr1:239711800-239712200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:239711800-239712200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
10	chr1:239711800-239712200	Enhancers	Pancreas	Pancrea
11	chr1:239711800-239712400	ZNF genes & repeats	Fetal Intestine Small	intestine
12	chr1:239712000-239712200	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr1:239712000-239712200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:239712000-239713000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
15	chr1:239712000-239731000	Weak transcription	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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