Variant report

Variant	rs12187674
Chromosome Location	chr5:94971549-94971550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94969812..94972807-chr5:94980208..94983859,3	K562	blood:
2	chr5:94966845..94971846-chr5:95064357..95069184,6	K562	blood:
3	chr5:94949076..94951830-chr5:94968057..94971746,3	K562	blood:
4	chr5:94971297..94975224-chr5:95070910..95073732,3	K562	blood:
5	chr5:94970162..94972670-chr5:94973796..94975499,2	MCF-7	breast:
6	chr5:94965792..94967759-chr5:94971451..94974340,2	K562	blood:
7	chr5:94967847..94971625-chr5:94973983..94977382,3	K562	blood:
8	chr5:94965792..94968676-chr5:94971451..94974340,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs150535	1.00[CHB][hapmap]
rs153917	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs2548130	1.00[CHB][hapmap]
rs2731815	1.00[ASW][hapmap]
rs466748	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs622266	1.00[CHB][hapmap]
rs987068	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12187674	GLRX	cis	parietal	SCAN
rs12187674	ANKRD32	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94968200-94973200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:94968200-94979800	Weak transcription	Primary T cells from cord blood	blood
3	chr5:94968400-94975200	Weak transcription	Pancreas	Pancrea
4	chr5:94968600-94974000	Weak transcription	GM12878-XiMat	blood
5	chr5:94969600-94976600	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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