Variant report

Variant	rs12187846
Chromosome Location	chr5:16410930-16410931
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10520839	1.00[ASN][1000 genomes]
rs12187808	1.00[ASN][1000 genomes]
rs12187814	1.00[ASN][1000 genomes]
rs12188926	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868550	1.00[ASN][1000 genomes]
rs16868571	1.00[ASN][1000 genomes]
rs16868576	1.00[ASN][1000 genomes]
rs60212641	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6878840	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6892949	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73753326	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9686174	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4736	chr5:16393955-16439055	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16405600-16418400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:16410000-16412800	Enhancers	Rectal Mucosa Donor 29	rectum
3	chr5:16410000-16415400	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr5:16410200-16411200	Weak transcription	Fetal Intestine Large	intestine
5	chr5:16410200-16411200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:16410600-16411600	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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