Variant report

Variant	rs12188002
Chromosome Location	chr5:30148681-30148682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10035906	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10940876	0.86[EUR][1000 genomes]
rs11948845	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12515411	0.86[EUR][1000 genomes]
rs13158406	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13162168	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4446473	0.86[EUR][1000 genomes]
rs4532372	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4867258	0.86[EUR][1000 genomes]
rs7706687	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881635	chr5:30122190-30371238	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:30147800-30149800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:30148200-30148800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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